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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35730291_35730750_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35730291 - 35730750
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGATAA
5'SS Class:
major
3'SS Sequence:
TTCACCCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
PALMAKRTKQEIKTAHKLAK
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.3
73.9
32.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.7
0.67
0.8
72.6
32.1
Minor 5ss
32.7
-2
2.9
38.8
46.3
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
DENND4C
Ensembl Gene ID:
ENSAPLG00000005223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019253
35705571 - 35752565
46995
ENSAPLT00000005454
35705571 - 35752565
46995
ENSAPLT00000045697
35705571 - 35754659
49089
ENSAPLT00000021519
35705571 - 35754659
49089