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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35730958_35731626_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35730958 - 35731626
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTATCTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CATCTGTTAATC
Flanking Amino Acid:
RKTDVEPLDEVCYRVVMQLC
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.7
82.7
36.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
74.3
0.55
1
73.5
41.7
Minor 5ss
27.5
-2.6
3.9
40.4
45.7
Minor BPS
49.2
-0
2
60.12
39.5

Associated Gene:

Gene:
DENND4C
Ensembl Gene ID:
ENSAPLG00000005223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021519
35705571 - 35754659
49089
ENSAPLT00000019253
35705571 - 35752565
46995
ENSAPLT00000005454
35705571 - 35752565
46995
ENSAPLT00000045697
35705571 - 35754659
49089