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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35744518_35745852_F

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
35744518 - 35745852
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AAAATCCAAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTTCTAAAAT
Flanking Amino Acid:
AEETSPAAEQSDVAEEQSKD
Intron Amino Acid Position:
1609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
49.3
-0
1
41.9
37.5
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
62.6
0.47
1.8
80.39
41.7

Associated Gene:

Gene:
DENND4C
Ensembl Gene ID:
ENSAPLG00000005223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045697
35705571 - 35754659
49089
ENSAPLT00000021519
35705571 - 35754659
49089
ENSAPLT00000019253
35705571 - 35752565
46995
ENSAPLT00000005454
35705571 - 35752565
46995