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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35746043_35747019_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35746043 - 35747019
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTATATAATA
Flanking Amino Acid:
SLPNSLQEVVDPLIKRPNPL
Intron Amino Acid Position:
1673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
89.4
0.89
0.7
89.2
27.3
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
56.3
0.19
1.7
70.57
35.3

Associated Gene:

Gene:
DENND4C
Ensembl Gene ID:
ENSAPLG00000005223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021519
35705571 - 35754659
49089
ENSAPLT00000019253
35705571 - 35752565
46995
ENSAPLT00000005454
35705571 - 35752565
46995
ENSAPLT00000045697
35705571 - 35754659
49089