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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35747266_35748609_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35747266 - 35748609
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCATGTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATGTTCTTAAAA
Flanking Amino Acid:
TSEHCNDGVQLPLTSLAQDS
Intron Amino Acid Position:
1755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
77
31.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75.2
0.57
0.9
72.6
37.5
Minor 5ss
29.3
-2.4
2.9
35.1
41.4
Minor BPS
71
0.65
1.3
74.7
36.6

Associated Gene:

Gene:
DENND4C
Ensembl Gene ID:
ENSAPLG00000005223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021519
35705571 - 35754659
49089
ENSAPLT00000019253
35705571 - 35752565
46995
ENSAPLT00000005454
35705571 - 35752565
46995
ENSAPLT00000045697
35705571 - 35754659
49089