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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35750519_35751654_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35750519 - 35751654
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGA
5'SS Class:
major
3'SS Sequence:
CAATATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TTATCCTTCACA
Flanking Amino Acid:
QNVKPDVKRQRSFYREILFL
Intron Amino Acid Position:
1845

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.4
39.3
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
66.5
0.37
0.9
58.2
42.3
Minor 5ss
27.9
-2.5
3.5
38
46.8
Minor BPS
75.7
0.8
1.7
84.37
35.6

Associated Gene:

Gene:
DENND4C
Ensembl Gene ID:
ENSAPLG00000005223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021519
35705571 - 35754659
49089
ENSAPLT00000019253
35705571 - 35752565
46995
ENSAPLT00000005454
35705571 - 35752565
46995
ENSAPLT00000045697
35705571 - 35754659
49089