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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35751720_35752428_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35751720 - 35752428
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GGTTTCATAAAT
Flanking Amino Acid:
VSLGRENIDIEVFDSEYRLA
Intron Amino Acid Position:
1867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
87.4
0.84
0.7
85.3
27.7
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
58.3
0.34
1.7
75.96
39.8

Associated Gene:

Gene:
DENND4C
Ensembl Gene ID:
ENSAPLG00000005223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045697
35705571 - 35754659
49089
ENSAPLT00000021519
35705571 - 35754659
49089
ENSAPLT00000019253
35705571 - 35752565
46995
ENSAPLT00000005454
35705571 - 35752565
46995