Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35765585_35842820_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

35765585 - 35842820

Intron Length:

77236

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATAGTTG

5'SS Class:

weak_major

3'SS Sequence:

CGATGAGCGCAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTGAT

U12 Branch Point Sequence:

GCTGCCAGAAGC

Flanking Amino Acid:

MLSFMLRTFYEKRMA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.36

1.1

58.1

41.2

Major BPS

67.4

0.43

1.1

57.1

41.8

Major PPT

45.3

-0.2

1.2

34.2

40.2

Minor 5ss

45.9

-0.4

3.2

60.4

46.7

Minor BPS

43.5

-0.5

52.78

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004889

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046611

35684734 - 35842835

158102