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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35768085_35776763_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35768085 - 35776763
Intron Length:
8679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGAGGG
5'SS Class:
major
3'SS Sequence:
TTTATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTCACA
Flanking Amino Acid:
VPAIAEFYNTISNVLFFVLP
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.1
48.3
42.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.9
0.85
0.7
83.6
31.3
Minor 5ss
23.8
-3
3.3
29.3
43.3
Minor BPS
60.4
0.32
1.8
75.15
36.6

Associated Gene:

Gene:
ACER2
Ensembl Gene ID:
ENSAPLG00000004885
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005027
35767977 - 35790367
22391