Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35816201_35821802_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35816201 - 35821802

Intron Length:

5602

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TTATCCCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

AACCTCTTATCC

Flanking Amino Acid:

VGSNIFDITVGRNLKVISWK

Intron Amino Acid Position:

568

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

75.3

40.8

Major BPS

79.1

0.72

69.3

38.4

Major PPT

76.3

0.59

0.9

70.9

34.7

Minor 5ss

36.4

-1.5

2.9

43.6

43.3

Minor BPS

52.7

0.06

1.6

59.04

39.8

Associated Gene:

Gene:

SLC24A2

Ensembl Gene ID:

ENSAPLG00000020062

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047599

35815981 - 35929783

113803