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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35819682_35821802_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35819682 - 35821802
Intron Length:
2121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTCAACA
Flanking Amino Acid:
VGSNIFDITVGLPLPWLLYA
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.7
0.85
0.8
85.4
27.8
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
72.9
0.71
1.4
83
31.4

Associated Gene:

Gene:
SLC24A2
Ensembl Gene ID:
ENSAPLG00000020062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004834
35819432 - 35929783
110352
ENSAPLT00000036873
35819024 - 35929783
110760
ENSAPLT00000017817
35819024 - 35929783
110760