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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35822520_35828301_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35822520 - 35828301
Intron Length:
5782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
AGGTGCTCACTG
Flanking Amino Acid:
WASLPDVRNPRSRKFFPITF
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
68.8
38
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
32.4
-2
2.7
41.3
38.3
Minor BPS
40.8
-0.8
2.1
42.35
43.1

Associated Gene:

Gene:
SLC24A2
Ensembl Gene ID:
ENSAPLG00000020062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047599
35815981 - 35929783
113803
ENSAPLT00000036873
35819024 - 35929783
110760
ENSAPLT00000017817
35819024 - 35929783
110760
ENSAPLT00000004834
35819432 - 35929783
110352