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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35828431_35843223_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35828431 - 35843223
Intron Length:
14793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
TCCACTTCAATA
Flanking Amino Acid:
NGIAHNVEEENEEDEDQPLS
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1.1
80.8
31.8
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
83.4
0.75
0.9
76.5
37.7
Minor 5ss
33.6
-1.9
3.1
44.2
43.6
Minor BPS
52.7
0.08
1.6
59.65
41

Associated Gene:

Gene:
SLC24A2
Ensembl Gene ID:
ENSAPLG00000020062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036873
35819024 - 35929783
110760
ENSAPLT00000017817
35819024 - 35929783
110760
ENSAPLT00000004834
35819432 - 35929783
110352
ENSAPLT00000047599
35815981 - 35929783
113803