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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_35843313_35845459_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35843313 - 35845459
Intron Length:
2147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GATAATGACACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTTATGGATA
Flanking Amino Acid:
SERQNGAANHEKSAKVEVAV
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
54.9
0.11
1.1
46.4
44.5
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
49
-0
1.7
64.47
35.4

Associated Gene:

Gene:
SLC24A2
Ensembl Gene ID:
ENSAPLG00000020062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017817
35819024 - 35929783
110760
ENSAPLT00000004834
35819432 - 35929783
110352
ENSAPLT00000047599
35815981 - 35929783
113803
ENSAPLT00000036873
35819024 - 35929783
110760