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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36075803_36086943_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36075803 - 36086943
Intron Length:
11141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AAATGTTCAACT
Flanking Amino Acid:
KQIKNGDCDKIVNLIEETGH
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
73
36.9
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
32.4
-2
3.3
43.9
43.9
Minor BPS
50.1
0.08
1.9
68.86
41.8

Associated Gene:

Gene:
MLLT3
Ensembl Gene ID:
ENSAPLG00000004429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040170
36075671 - 36215515
139845