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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36097659_36113430_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36097659 - 36113430
Intron Length:
15772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTGAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTATTTATTT
Flanking Amino Acid:
MEENLSSKSESEQPSPASSS
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75
0.56
1.7
88.7
28.3
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
58.5
0.34
1.8
77.47
39.3

Associated Gene:

Gene:
MLLT3
Ensembl Gene ID:
ENSAPLG00000004429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004552
36075671 - 36153884
78214
ENSAPLT00000043492
36075671 - 36161584
85914
ENSAPLT00000040170
36075671 - 36215515
139845
ENSAPLT00000022051
36075671 - 36171359
95689
ENSAPLT00000019493
36075671 - 36215515
139845