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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36114040_36124977_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36114040 - 36124977
Intron Length:
10938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTTTTTGAAGT
Flanking Amino Acid:
VKKKSSHGPKDPTKLLNTNS
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
57.9
0.33
1.7
76.88
39.8

Associated Gene:

Gene:
MLLT3
Ensembl Gene ID:
ENSAPLG00000004429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040170
36075671 - 36215515
139845
ENSAPLT00000022051
36075671 - 36171359
95689
ENSAPLT00000019493
36075671 - 36215515
139845
ENSAPLT00000004552
36075671 - 36153884
78214
ENSAPLT00000043492
36075671 - 36161584
85914