About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36125098_36146840_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36125098 - 36146840
Intron Length:
21743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCACAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTGATTTACAT
Flanking Amino Acid:
FRRKLLKAGGIMVMSDGTSF
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
68.2
0.41
0.9
62.7
31.7
Minor 5ss
31
-2.2
2.9
34.5
41
Minor BPS
49.2
0.02
2
73.73
43.2

Associated Gene:

Gene:
MLLT3
Ensembl Gene ID:
ENSAPLG00000004429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022051
36075671 - 36171359
95689
ENSAPLT00000019493
36075671 - 36215515
139845
ENSAPLT00000004552
36075671 - 36153884
78214
ENSAPLT00000043492
36075671 - 36161584
85914
ENSAPLT00000040170
36075671 - 36215515
139845