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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36146985_36150860_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36146985 - 36150860
Intron Length:
3876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCAACCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTATTTTCAACC
Flanking Amino Acid:
LPIEVYFKNKEEPKKVRFDY
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.5
0.55
0.9
70.9
34.6
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
66.5
0.5
1.5
75.01
35.4

Associated Gene:

Gene:
MLLT3
Ensembl Gene ID:
ENSAPLG00000004429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004552
36075671 - 36153884
78214
ENSAPLT00000043492
36075671 - 36161584
85914
ENSAPLT00000040170
36075671 - 36215515
139845
ENSAPLT00000022051
36075671 - 36171359
95689
ENSAPLT00000019493
36075671 - 36215515
139845