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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36150944_36153856_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36150944 - 36153856
Intron Length:
2913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCTGTTAAAT
Flanking Amino Acid:
MYNSSIHKKVCKDPPYKVE
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.1
0.83
0.7
84.9
28.6
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
58.1
0.33
2.1
82.38
38.6

Associated Gene:

Gene:
MLLT3
Ensembl Gene ID:
ENSAPLG00000004429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004552
36075671 - 36153884
78214