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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36263055_36263525_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36263055 - 36263525
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAA
U12 Branch Point Sequence:
ATAACTTGAACC
Flanking Amino Acid:
IEDNFELLKEVFPAEQCIIG
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
65.8
0.39
1
57.3
39.4
Major PPT
89.1
0.88
0.6
85.8
21.3
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
60.7
0.32
1.4
67.75
37.1

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038083
36238775 - 36350860
112086
ENSAPLT00000034849
36238236 - 36349352
111117
ENSAPLT00000003744
36238236 - 36350860
112625