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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36266794_36285511_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36266794 - 36285511
Intron Length:
18718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TAATCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTAAAAATAATC
Flanking Amino Acid:
TEVAKADCSQVCVAQILRTI
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
80.9
0.7
0.9
77.9
35.9
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
45.1
-0.3
2
59.86
38.3

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038083
36238775 - 36350860
112086