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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36288017_36297468_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36288017 - 36297468
Intron Length:
9452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTCCTCCAACT
Flanking Amino Acid:
QGLQALCEAEVVCIRSTWNA
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.7
0.71
0.8
78.3
29.8
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
53.6
0.19
1.9
77.34
38.6

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038083
36238775 - 36350860
112086
ENSAPLT00000034849
36238236 - 36349352
111117
ENSAPLT00000003744
36238236 - 36350860
112625