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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36297604_36297984_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36297604 - 36297984
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TTTGCTTTTATA
Flanking Amino Acid:
SLTVNTNEYEKFKAQVISFL
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.6
31.9
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
84.9
0.79
0.7
80.3
31.8
Minor 5ss
43.1
-0.8
2.4
55.1
42.2
Minor BPS
62
0.37
1.7
74.49
37.5

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038083
36238775 - 36350860
112086
ENSAPLT00000034849
36238236 - 36349352
111117
ENSAPLT00000003744
36238236 - 36350860
112625