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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36298036_36298616_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36298036 - 36298616
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GCTGATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTCTGCTGATTT
Flanking Amino Acid:
SFLWKNTQNKDAIVAVSAYK
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
71.1
0.47
0.9
61.7
44.2
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
48.8
-0
2.1
72.32
45

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034849
36238236 - 36349352
111117
ENSAPLT00000003744
36238236 - 36350860
112625
ENSAPLT00000038083
36238775 - 36350860
112086