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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36300340_36303986_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36300340 - 36303986
Intron Length:
3647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
GTGCTTTATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TGTGCTTTATCC
Flanking Amino Acid:
LFLTPASVLGAFEEFATSLV
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.7
35.5
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
74
0.54
1
65.9
44.5
Minor 5ss
43.8
-0.7
3.3
63.6
48.1
Minor BPS
60.7
0.31
1.7
70.66
41

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038083
36238775 - 36350860
112086
ENSAPLT00000034849
36238236 - 36349352
111117
ENSAPLT00000003744
36238236 - 36350860
112625