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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36304176_36304442_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36304176 - 36304442
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTGC
5'SS Class:
major
3'SS Sequence:
CTCCCTCTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTGAGCT
Flanking Amino Acid:
KQPGMTPGLAAGMLLCYDLP
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.8
42.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.2
0.48
1
74.7
27.8
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
57
0.3
1.9
82.08
39.1

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003744
36238236 - 36350860
112625
ENSAPLT00000038083
36238775 - 36350860
112086
ENSAPLT00000034849
36238236 - 36349352
111117