Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36304565_36315851_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36304565 - 36315851

Intron Length:

11287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGTGC

5'SS Class:

strong_major

3'SS Sequence:

GTGTGTTGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATCAA

U12 Branch Point Sequence:

CAGTAATCAATT

Flanking Amino Acid:

QQMLVALIHEVNIQPSEWHR

Intron Amino Acid Position:

879

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.9

73.9

Major BPS

71.2

0.53

72.3

32.8

Major PPT

66.4

0.37

1.1

60.4

44.9

Minor 5ss

37.1

-1.5

3.3

50.2

46.4

Minor BPS

45.2

-0.2

1.9

59.73

43.5

Associated Gene:

Gene:

FOCAD

Ensembl Gene ID:

ENSAPLG00000003581

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038083

36238775 - 36350860

112086

ENSAPLT00000034849

36238236 - 36349352

111117

ENSAPLT00000003744

36238236 - 36350860

112625