Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36321393_36322475_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36321393 - 36322475

Intron Length:

1083

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

TAACAATGAACA

Flanking Amino Acid:

LSSDNEGMPETEPDFLPTQQ

Intron Amino Acid Position:

990

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.1

1.06

0.7

83.2

30.8

Major BPS

61.3

0.28

30.6

Major PPT

0.94

0.7

88.3

28.9

Minor 5ss

33.5

-1.9

2.9

40.7

45.5

Minor BPS

46.6

-0.2

1.8

59.24

38.8

Associated Gene:

Gene:

FOCAD

Ensembl Gene ID:

ENSAPLG00000003581

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038083

36238775 - 36350860

112086

ENSAPLT00000034849

36238236 - 36349352

111117

ENSAPLT00000003744

36238236 - 36350860

112625