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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36328603_36332063_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36328603 - 36332063
Intron Length:
3461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACCACATAACA
Flanking Amino Acid:
SEDQSRSVQEVLSYSVACSC
Intron Amino Acid Position:
1188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.9
32.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
46.7
-0.3
2.8
66
45.1
Minor BPS
51.2
0.03
1.8
64.59
40.8

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003744
36238236 - 36350860
112625
ENSAPLT00000038083
36238775 - 36350860
112086
ENSAPLT00000034849
36238236 - 36349352
111117