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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36333048_36334488_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36333048 - 36334488
Intron Length:
1441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
ACTACATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
TGATCCTGAACT
Flanking Amino Acid:
PAWIKTLIAEGSPTMQRLAA
Intron Amino Acid Position:
1269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
73
0.52
1
62.5
42.7
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
76.5
0.91
1.4
87.33
37.3

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038083
36238775 - 36350860
112086
ENSAPLT00000034849
36238236 - 36349352
111117
ENSAPLT00000003744
36238236 - 36350860
112625