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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36335880_36337097_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36335880 - 36337097
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAA
U12 Branch Point Sequence:
TTTGTCTTCACA
Flanking Amino Acid:
CLSSTQSRASVPPDFSYLPE
Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
68.6
37.4
Major BPS
62.3
0.31
1
59.3
37.5
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
38.4
-1.3
3.1
47.7
42.5
Minor BPS
64.5
0.45
1.9
78.35
38.8

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038083
36238775 - 36350860
112086
ENSAPLT00000034849
36238236 - 36349352
111117
ENSAPLT00000003744
36238236 - 36350860
112625