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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36341218_36343171_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36341218 - 36343171
Intron Length:
1954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATGTATG
5'SS Class:
major
3'SS Sequence:
ATTTGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ACTTTATGACCC
Flanking Amino Acid:
VAPPLVYSLSVKTQKYLLVS
Intron Amino Acid Position:
1462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
67.4
43.5
Major BPS
75.1
0.62
1
65.6
41
Major PPT
84.8
0.78
0.8
81.6
35.5
Minor 5ss
47.4
-0.3
2.5
60.4
44.2
Minor BPS
46
-0.3
1.9
58.26
40.5

Associated Gene:

Gene:
FOCAD
Ensembl Gene ID:
ENSAPLG00000003581
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003744
36238236 - 36350860
112625
ENSAPLT00000038083
36238775 - 36350860
112086
ENSAPLT00000034849
36238236 - 36349352
111117