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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36369472_36369889_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
36369472 - 36369889
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGATCCTG
5'SS Class:
weak_major
3'SS Sequence:
TTCACCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTTGCTTTATCA
Flanking Amino Acid:
PGPMAEPLWLITMNTYLFV
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.2
0.05
1.1
45.8
43.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.9
0.56
0.8
68.6
31.7
Minor 5ss
39
-1.2
3.3
57.6
46.5
Minor BPS
60.1
0.31
1.7
70.42
42.6

Associated Gene:

Gene:
HACD4
Ensembl Gene ID:
ENSAPLG00000003531
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003611
36356382 - 36369918
13537