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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36398938_36399308_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36398938 - 36399308
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TACCTCTTATTT
Flanking Amino Acid:
RSSEPAHHEENIRKLSSEPR
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
88.4
0.86
0.6
84.8
22.8
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
56.3
0.28
1.6
69.92
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002087
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034655
36395213 - 36439216
44004
ENSAPLT00000027133
36395213 - 36459932
64720
ENSAPLT00000002402
36395213 - 36441239
46027