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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36401132_36402223_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36401132 - 36402223
Intron Length:
1092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTAT
5'SS Class:
major
3'SS Sequence:
TTCTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TTCTTGTTTACA
Flanking Amino Acid:
LNTVRQIIEQDKHALLDVTP
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69
38.3
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
88.4
0.86
0.8
83.2
32
Minor 5ss
36.4
-1.5
3.7
54.5
49.7
Minor BPS
50.4
0
2.3
70.37
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002087
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034655
36395213 - 36439216
44004
ENSAPLT00000027133
36395213 - 36459932
64720
ENSAPLT00000002402
36395213 - 36441239
46027