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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36402304_36402410_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36402304 - 36402410
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TATAGATGAACT
Flanking Amino Acid:
NDLPHLYQTAKTEPRDAGSE
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.2
35.7
Major BPS
71.4
0.53
1
67
39.8
Major PPT
76
0.59
1
70.1
40.4
Minor 5ss
48.2
-0.2
2.8
66.3
38.7
Minor BPS
48
-0
2.1
72.67
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002087
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034655
36395213 - 36439216
44004
ENSAPLT00000027133
36395213 - 36459932
64720
ENSAPLT00000002402
36395213 - 36441239
46027