About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36413373_36414114_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36413373 - 36414114
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTGCCTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGCCTTGAACA
Flanking Amino Acid:
LRKSGKVATIVVKRPRKVQA
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
100
1.24
0.5
100
0
Major PPT
68.8
0.42
1
65.4
39.9
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
65.9
0.5
1.4
73.79
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002087
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002402
36395213 - 36441239
46027
ENSAPLT00000034655
36395213 - 36439216
44004
ENSAPLT00000027133
36395213 - 36459932
64720