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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36414218_36416595_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36414218 - 36416595
Intron Length:
2378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGCAAT
5'SS Class:
major
3'SS Sequence:
TCTGCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCTCT
Flanking Amino Acid:
LPGGPADGLLQENDRVVIVN
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
72
39.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
83.7
0.76
0.8
80.8
31.2
Minor 5ss
43.2
-0.7
3
63.3
42
Minor BPS
47.7
-0
3.6
87.15
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002087
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034655
36395213 - 36439216
44004
ENSAPLT00000027133
36395213 - 36459932
64720
ENSAPLT00000002402
36395213 - 36441239
46027