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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36446962_36450719_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36446962 - 36450719
Intron Length:
3758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTACACAAAACT
Flanking Amino Acid:
IRKEVYRSLNREHSVALPSP
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
47.8
-0
2.1
72.87
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002087
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027133
36395213 - 36459932
64720