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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36464908_36467971_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36464908 - 36467971
Intron Length:
3064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTGTACTTACAC
Flanking Amino Acid:
NRQIWLSSPTSGPKRYDWTG
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.6
93.1
14.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
84.9
0.78
0.8
77.7
36.7
Minor 5ss
41.9
-0.9
2.9
57.8
46.8
Minor BPS
48.8
-0.1
1.9
60.3
44.6

Associated Gene:

Gene:
FXN
Ensembl Gene ID:
ENSAPLG00000025427
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020646
36464754 - 36471614
6861