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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36468070_36471524_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36468070 - 36471524
Intron Length:
3455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGATTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTATTT
Flanking Amino Acid:
TPEDYDVSLGSGVLTVKLGG
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80.5
35
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.8
0.45
1.1
72.7
41.4
Minor 5ss
56.3
0.21
2.4
67
44.2
Minor BPS
52.6
0.16
2.2
82.08
39.3

Associated Gene:

Gene:
FXN
Ensembl Gene ID:
ENSAPLG00000025427
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020646
36464754 - 36471614
6861