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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36486191_36497509_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36486191 - 36497509
Intron Length:
11319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TGTTTGTTAACT
Flanking Amino Acid:
QRDQHMLYSSSKGLPSSSTY
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
69.1
0.68
2
88.23
36.9

Associated Gene:

Gene:
PIP5K1B
Ensembl Gene ID:
ENSAPLG00000016263
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040542
36478171 - 36588034
109864
ENSAPLT00000016984
36478171 - 36553651
75481