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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36497655_36498410_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36497655 - 36498410
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGAATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTGTGAATT
Flanking Amino Acid:
GQSYSSLDEEVLSSRHRPDL
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
70
0.45
1
67.8
42.7
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
59.2
0.37
2.1
84.15
37

Associated Gene:

Gene:
PIP5K1B
Ensembl Gene ID:
ENSAPLG00000016263
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040542
36478171 - 36588034
109864
ENSAPLT00000016984
36478171 - 36553651
75481