About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36498567_36502125_R


Intron Information:

Intron Rank:
10

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
36498567 - 36502125

Intron Length:
3559

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGAAAG

5'SS Class:
strong_major

3'SS Sequence:
TTTGGTAATGCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGTTCAT

U12 Branch Point Sequence:
CTTCATTCAACA

Flanking Amino Acid:
MSTRVFKKVQALRSSPSKKR

Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
91.4
0.98
0.8
80.7
33.7

Major BPS
84.8
0.86
1
85.7
34.9

Major PPT
73.2
0.52
1
67.2
42.9

Minor 5ss
32.8
-2
2.9
39.4
46.1

Minor BPS
52.2
0.07
1.7
66.1
40.2

Associated Gene:

Gene:
PIP5K1B

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

36478171 - 36553651
75481

36478171 - 36588034
109864