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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36525791_36537482_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36525791 - 36537482
Intron Length:
11692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
FYVVESVFLPSEGSNLTPAH
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
100
1.24
0.5
100
0
Major PPT
91.2
0.93
0.7
89.3
26.1
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
PIP5K1B
Ensembl Gene ID:
ENSAPLG00000016263
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040542
36478171 - 36588034
109864
ENSAPLT00000016984
36478171 - 36553651
75481