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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36553000_36553603_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36553000 - 36553603
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
CTTGTGTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAACT
Flanking Amino Acid:
YPFGKERMKLMSSVTENGDV
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.1
0.47
1
70.3
40.1
Minor 5ss
35
-1.7
3.5
45
44.5
Minor BPS
68.3
0.65
1.5
85.33
34.5

Associated Gene:

Gene:
PIP5K1B
Ensembl Gene ID:
ENSAPLG00000016263
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016984
36478171 - 36553651
75481