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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36553000_36555226_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
36553000 - 36555226
Intron Length:
2227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.7
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.1
0.47
1
70.3
40.1
Minor 5ss
45
-0.5
2.5
51.2
45.5
Minor BPS
68.3
0.65
1.5
85.33
34.5

Associated Gene:

Gene:
PIP5K1B
Ensembl Gene ID:
ENSAPLG00000016263
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040542
36478171 - 36588034
109864