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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36684633_36686503_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
36684633 - 36686503
Intron Length:
1871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GTCGGCCACACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGGCCAC
U12 Branch Point Sequence:
TTGTCGGCCACA
Flanking Amino Acid:
EPNKCTACGTDRRGMERFLY
Intron Amino Acid Position:
991

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
40
-0.6
1.3
39.2
40.8
Major PPT
58.3
0.19
1
49.9
38.5
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
38.2
-0.9
2.9
58.89
46.9

Associated Gene:

Gene:
PCSK5
Ensembl Gene ID:
ENSAPLG00000014928
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015651
36684319 - 36904096
219778