Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_36713489_36722607_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36713489 - 36722607

Intron Length:

9119

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGACTG

5'SS Class:

strong_major

3'SS Sequence:

TAAATACTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GTTTCTAAAACT

Flanking Amino Acid:

PSQLRNFKTPGKLKEWSLVL

Intron Amino Acid Position:

588

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

68.1

42.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

66.1

0.36

56.2

44.1

Minor 5ss

41.7

-0.9

3.1

48.1

Minor BPS

58.7

0.35

81.57

39.9

Associated Gene:

Gene:

PCSK5

Ensembl Gene ID:

ENSAPLG00000014928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028013

36688332 - 36904096

215765

ENSAPLT00000015651

36684319 - 36904096

219778